Previous efforts to examine the mobility of genes have reported higher rates of HGT in phylogenetically related organisms, compared with those distantly related (), and between organisms with shared GC content and kmer content (), or methylation patterns ().Genome content, such as the presence of specific plasmid replicon and mobilization machinery or …
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HGT is the process of sharing genetic material among different microbial species. It links different species by transferring genetic information. By analyzing HGT networks constructed from two longitudinal metagenomic sequencing data sets: Mother-to-Child and longitudinal IBD data sets, we found the HGT network is scale-free, whose degree ...
The extent of horizontal gene transfer (HGT) is now becoming apparent. In this Review, the authors describe the mechanisms of HGT using examples from recent findings of HGT between prokaryotes and ...
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First, the eukaryotic nuclear genome was identified as a mosaic of prokaryotic sequences, with contributions from ancestral Archaea and bacteria (1–4).Second, acquisition of novel characters by HGT was thought to dominate adaptive sequence evolution, because the import of ready-made responses to environmental challenge was assumed to be much faster than tinkering with …
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Horizontal gene transfer (HGT) has a major impact on the evolution of prokaryotic genomes, as it allows genes evolved in different contexts to be combined in a single genome, greatly enhancing the ways evolving organisms can explore the gene content space and adapt to the environment. A systematic analysis of HGT in a large number of genomes is of key …
HGT-Finder will be a very valuable addition to the toolbox of HGT research because many of its predictions can be verified by phylogenetic analysis, it is fully automated, and much easier to install and run. HGT-Finder requires pre-annotated genomes (i.e., protein-coding genes
Background A fundamental concept in biology is that heritable material is passed from parents to offspring, a process called vertical gene transfer. An alternative mechanism of gene acquisition is through horizontal gene transfer (HGT), which involves movement of genetic materials between different species. Horizontal gene transfer has been found prevalent in …
HGT can be used in artificial gene transfer techniques for therapeutic purposes, such as gene therapy. In agriculture, understanding HGT can enhance genetic modification methods in crops, leading to improved traits and increased yield. HGT contributes not only to beneficial traits but also to the emergence and recurrence of various diseases.
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a Without HGT, the competition of two species (({s}_{1}) and ({s}_{2})) can be described by the LV model that consists of two ODEs. b The phase diagram of two competing species without HGT ...
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The exchange of genes between viruses and eukaryotes through horizontal gene transfer (HGT) is a key evolutionary driver capable of facilitating host manipulation and viral resistance 1,2,3,4.Host ...
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Horizontal gene transfer (HGT) and mutation play vital roles in creating the vast genetic diversity observed in bacteria. In principal, transfer can and presumably often does occur between members of the same bacterial strain, though in practice such transfers can be difficult to demonstrate after the fact.
Horizontal gene transfer (HGT), the movement of genetic material across branches of the tree of life, is well established in prokaryotes and uncontroversial. This is explained in part by relatively compact prokaryote genomes that facilitate assembly and gene prediction, resulting in thousands of complete genomes for analysis. By contrast, their large and often complex …
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Horizontal gene transfer (HGT) refers to the exchange of genetic material between disparate groups of organisms other than from parent to offspring, which has been confirmed as a very significant factor in adaptive evolution, disease emergence and metabolic shift that can act across various species. However, current methods for HGT detection ...
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Perform HGT prediction: hgtector analyze -i search_dir -o analyze_dir -t hgtdb/taxdump. Examine the prediction results under the analyze_dir directory. It is recommended that you read the first run, second run and real runs pages to get familiar with the pipeline, ...
Horizontal gene transfer (HGT) is the transfer of genetic material across species boundaries and has been a driving force in prokaryotic evolution. HGT involving eukaryotes appears to be …
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